COMPARTMENTS

Subcellular localization database

The COMPARTMENTS database is available for download in tab-delimited format:

All channels integrated: human mouse rat fly worm yeast arabidopsis
Knowledge channel: human mouse rat fly worm yeast arabidopsis
Experiments channel: human
Text mining channel: human mouse rat fly worm yeast arabidopsis
Predictions channel: human mouse rat fly worm yeast arabidopsis
Benchmark set: human yeast

Evidence has been propagated through is_a and part_of relationships to list all applicable ontology terms. While channel and integrated data are being updated on a weekly basis, the benchmark files are the original datasets from the COMPARTMENTS publication (using STRING v9.1 identifiers). Download files from earlier versions are archived on figshare.

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